Lotus R6 Upgrade Path

IBM Redbook:
Section 4.3

Recommended upgrade path
1. Upgrade the Administration server and Administrator clients.
2. Upgrade the Domino Directory.
3. Upgrade Hub servers.
4. Upgrade Mail servers.
5. Upgrade Application severs.
6. Upgrade Notes clients.
7. Upgrade applications and databases.
8. Upgrade to the new ODS.
9. Steady state (performance tuning and optimizing your environment).
10. Utilization of new features.

I answered "no" to the update directory to R6 question when R6 server first started (should have answered yes.) So I followed the manual instructions (which can be done before upgrading server... but I did it after). With server down, I replaced the design with the new pubnames.ntf. Still down, used this DOS command:
>\data directory\nupdall -R names.nsf (for win32 platform)
Only the manual is wrong... should say \app directory\nupdall...
d:\lotus\domino\nupdall -R names.
12/13/2003 03:03:13 PM Index update process started
12/13/2003 03:03:13 PM Updating views in e:\Lotus\Domino\Data\names.nsf

Section 7.4.1 on mail upgrade:
tell router quit (disable mail routing while files upgrade)
load convert -u mail\bjones StdR50mail mail6.ntf
where the -u switch upgrades folders